How do I transfer CF9 file system to new server?

We have a setup a new server running ColdFusion 9. We have installed ColdFusion and now I'm wondering how I would transfer the file system to the new server and use it as our Intranet server so we can demise the old server. After the ColdFusion install the CFIDE folder is in a different location on the new server. If I copy the old files to this directory (this is where our current files are stored) how do I point ColdFusion to this directory so we can use the new server for our Intranet? New to this so any information would be appreciated greatly.